R-chie [ɑrči]
A web server and R package for plotting RNA secondary structures, trans RNA-RNA interactions and genomic interactions.

To cite R-chie and R4RNA

Volodymyr Tsybulskyi, Mohamed Mounir, Irmtraud M Meyer, R-CHIE: a web server and R package for visualizing cis and trans RNA–RNA, RNA–DNA and DNA–DNA interactions, Nucleic Acids Research, Volume 48, Issue 18, 09 October 2020, Page e105, doi:10.1093/nar/gkaa708

Daniel Lai, Jeff R. Proctor, Jing Yun A. Zhu, and Irmtraud M. Meyer (2012) R-chie: a web server and R package for visualizing RNA secondary structures. Nucleic Acids Research, first published online March 19, 2012. doi:10.1093/nar/gks241


Nicholas J. P. Wiebe, Irmtraud M. Meyer (2010) Transat—A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures. PLoS Comput Biol 6(6): e1000823. doi:10.1371/journal.pcbi.1000823