e-RNA
Brought to you by the Meyer Lab @ MDC Berlin

A collection of electronic tools to help you find your way in the RNA world

× Disclaimer! Any plots that have been on our servers for a month or more are automatically deleted.

Cluster Usage

Cluster Info

Check useful information related to our cluster...(Coming soon).

Visualization (Web Server)

R-chie & R4RNA

Visualize RNA secondary structures, RNA-RNA, RNA-DNA, and DNA-DNA interactions as arc diagrams >> Cite

CoBold

Visualize CoBold predictions of transient RNA structure features that could aid or hinder the formation of a given RNA secondary structure. The source code of CoBold will be made available for downloading as soon as the manuscript describing CoBold has been accepted for publication.

Secondary Structure Prediction (Web Servers)

Transat

Detect evolutionarily conserved features from homologue alignments >> Cite

Simulfold

Simultaneous co-estimation of RNA structure, multiple sequence alignment, and evolutionary tree >> Cite

RNA-Decoder

Detecting conserved RNA secondary-structure overlapping protein-coding RNA sequences >> Cite & Cite

CoFold

Thermodynamic RNA secondary-structure prediction that takes co-transcriptional folding into account >> Cite

Circular RNAs

BIQ

Search transcriptome sequencing datasets for circular RNAs, example datasets >> Cite

Comparative Prediction of Protein-Coding Genes (External Links)

HMMConverter

A software toolbox for Hidden Markov Models >> Cite

Doublescan

Comparative, alignment-free, ab-initio gene prediction >> Cite

Projector

Comparative, alignment free gene prediction >> Cite