This package includes the long data set consisting of 16S and 23S ribosomal RNAs used for performance analysis of CoFold. It contains reference sequences, their corresponding structures, and CoFold predictions using both the Turner, 1999 parameter set, and the Andronescu 2007 parameter set. See the included README for a detailed description of the data set.
CoFold source code is derived from the ViennaRNA 2.0.4 package. Full credit is given to Ivo Hofacker's group at the Institute for Theoretical Chemistry of the University of Vienna. Please see the README included in the source code package for further information regarding CoFold and its usage.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.