CoBold visualization app

How to use

Input

Upload the reference structure sequence file in HELIX format:

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See file content:

The clashing prediction in HELIX format:

Clashing prediction file:

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Filter duplicate elements of clashing raw data

See file content:

And last, but not least, the alignment in FASTA format:

Alignment file:

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See file content:

Visualization

Filter by helix type

5'CIS

5'TRANS

5'INTRA

3'CIS

3'TRANS

3'INTRA

Filter by pValue

Filter by Transat predictions

Transat predictions file:

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See file content:

Select the desired kind of plot:

All clashing helices

Lowest pvalue clashes

What to base the legend on?

Helix types

pValues

Show legend?

Specify title?

Select the desired color scheme:

R-chie scheme

Colorblind-friendly scheme